Dr.Öğr.Üyesi Berna Doğan

Efficient, rapid, and high-yield synthesis of aryl Schiff base derivatives and their in vitro and in silico inhibition studies of hCA I, hCA II, AChE, and BuChE.

Özil M., Balaydın H. T., Dogan B., Şentürk M., Durdagi S.

Archiv der Pharmazie , 2024 (SCI-Expanded)

Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks

Tunc H., Doğan B., Kiraz B. N. D., Sarı M., Durdagi S., Kotil S.

PeerJ , cilt.11, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma

A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth

Calis S., Dogan B., DURDAĞI S., Celebi A., Yapicier O., KILIÇ T., et al.

CELL DEATH DISCOVERY , cilt.8, sa.1, 2022 (SCI-Expanded)

Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines

Sucu B. O., Koc E. B., Savlug Ipek O., Mirat A., Almas F., Guzel M. A., et al.

Journal of Molecular Graphics and Modelling , cilt.113, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma

Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2: A Combined in silico and in vitro Study

Durdagi S., Orhan M. D., Aksoydan B., Calis S., Doğan B., Sahin K., et al.

Molecular Informatics , cilt.41, sa.2, 2022 (SCI-Expanded) Sürdürülebilir Kalkınma

Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing

DURDAĞI S., Dag C., Dogan B., Yigin M., Avsar T., Buyukdag C., et al.

STRUCTURE , cilt.29, sa.12, ss.1382-1403, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Investigation of supramolecular interaction of quercetin withN,N-dimethylamine-functionalizedp-sulfonated calix[4,8]arenes using molecular modeling and theirin vitrocytotoxic response towards selected cancer cells

Oguz M., Doğan B., Durdagi S., Bhatti A. A., Karakurt S., Yilmaz M.

New Journal of Chemistry , cilt.45, sa.39, ss.18443-18452, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors

Ozten O., ZENGİN KURT B., Sonmez F., Doğan B., Durdagi S.

Bioorganic Chemistry , cilt.115, 2021 (SCI-Expanded)

Structural and Functional Characterization of Allatostatin Receptor Type-C of Thaumetopoea pityocampa, a Potential Target for Next-Generation Pest Control Agents

Shahraki A., Işbilir A., Doğan B., Lohse M. J., Durdagi S., Birgul-Iyison N.

Journal of Chemical Information and Modeling , cilt.61, sa.2, ss.715-728, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

An Integrated in silico Approach and in vitro Study for the Discovery of Small-Molecule USP7 Inhibitors as Potential Cancer Therapies

Kanan D., Kanan T., Doğan B., Orhan M. D., Avsar T., Durdagi S.

ChemMedChem , cilt.16, sa.3, ss.555-567, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Drug Re-positioning Studies for Novel HIV-1 Inhibitors Using Binary QSAR Models and Multi-target-driven In Silico Studies

Doğan B., Durdagi S.

Molecular Informatics , cilt.40, sa.2, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Formation of the inclusion complex of water soluble fluorescent calix[4]arene and naringenin: solubility, cytotoxic effect and molecular modeling studies

Oguz M., Bhatti A. A., Doğan B., Karakurt S., Durdagi S., Yilmaz M.

Journal of Biomolecular Structure and Dynamics , cilt.38, sa.13, ss.3801-3813, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma

Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2

Tutumlu G., Dogan B., Avsar T., Orhan M. D., Calis S., DURDAĞI S.

FRONTIERS IN CHEMISTRY , cilt.8, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma

Synthesis, biological activity and multiscale molecular modeling studies of bis-coumarins as selective carbonic anhydrase IX and XII inhibitors with effective cytotoxicity against hepatocellular carcinoma

ZENGİN KURT B., DAĞ A., Doğan B., Durdagi S., Angeli A., Nocentini A., et al.

Bioorganic Chemistry , cilt.87, ss.838-850, 2019 (SCI-Expanded)

Current status of multiscale simulations on GPCRs

Durdagi S., Doğan B., Erol I., Kayık G., Aksoydan B.

Current Opinion in Structural Biology , cilt.55, ss.93-103, 2019 (SCI-Expanded)

In silico dissolution rates of pharmaceutical ingredients

Doğan B., Schneider J., Reuter K.

Chemical Physics Letters , cilt.662, ss.52-55, 2016 (SCI-Expanded)

Free radical polymerization of ethyl methacrylate and ethyl α-hydroxy methacrylate: A computational approach to the propagation kinetics

Doğan B., Catak S., Van Speybroeck V., Waroquier M., Aviyente V.

Polymer , cilt.53, sa.15, ss.3211-3219, 2012 (SCI-Expanded)

Dr.Öğr.Üyesi Berna Doğan

Yayınlar & Eserler

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Efficient, rapid, and high-yield synthesis of aryl Schiff base derivatives and their in vitro and in silico inhibition studies of hCA I, hCA II, AChE, and BuChE.

Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks

A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth

Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines

Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2: A Combined in silico and in vitro Study

Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing

Investigation of supramolecular interaction of quercetin withN,N-dimethylamine-functionalizedp-sulfonated calix[4,8]arenes using molecular modeling and theirin vitrocytotoxic response towards selected cancer cells

Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors

Structural and Functional Characterization of Allatostatin Receptor Type-C of Thaumetopoea pityocampa, a Potential Target for Next-Generation Pest Control Agents

An Integrated in silico Approach and in vitro Study for the Discovery of Small-Molecule USP7 Inhibitors as Potential Cancer Therapies

Drug Re-positioning Studies for Novel HIV-1 Inhibitors Using Binary QSAR Models and Multi-target-driven In Silico Studies

Formation of the inclusion complex of water soluble fluorescent calix[4]arene and naringenin: solubility, cytotoxic effect and molecular modeling studies

Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2

Synthesis, biological activity and multiscale molecular modeling studies of bis-coumarins as selective carbonic anhydrase IX and XII inhibitors with effective cytotoxicity against hepatocellular carcinoma

Current status of multiscale simulations on GPCRs

In silico dissolution rates of pharmaceutical ingredients

Free radical polymerization of ethyl methacrylate and ethyl α-hydroxy methacrylate: A computational approach to the propagation kinetics

Metrikler

Yayın

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

H-İndeks (Scopus)

Proje

Tez Danışmanlığı

Açık Erişim