Doç.Dr. Ayşe Özge Kürkçüoğlu Levitas | AVESİS

Akademik Veri Yönetim Sistemi

Yayınlar & Eserler

SCI, SSCI ve AHCI İndekslerine Giren Dergilerde Yayınlanan Makaleler

Exploring species-specific inhibitors with multiple target sites on S. aureus pyruvate kinase using a computational workflow

Yüce M., Sarica Z., Ates B., Kurkcuoglu O.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , cilt.41, sa.8, ss.3496-3510, 2023 (SCI-Expanded) Sürdürülebilir Kalkınma

Sürdürülebilir Kalkınma

Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release

Kocaaga B., Güner F. S., Kurkcuoglu O.

MATERIALS TODAY COMMUNICATIONS , cilt.31, 2022 (SCI-Expanded)

Pectin-Zeolite-Based Wound Dressings with Controlled Albumin Release

Kocaaga B., Kurkcuoglu O., Tatlier M., Dinler-Doganay G., BATIREL S., Guner F. S.

POLYMERS , cilt.14, sa.3, 2022 (SCI-Expanded)

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Sürdürülebilir Kalkınma

Potential allosteric sites captured in glycolytic enzymes via residue-based network models: Phosphofructokinase, glyceraldehyde-3-phosphate dehydrogenase and pyruvate kinase

Celebi M., Inan T., Kurkcuoglu O., Akten E. D.

BIOPHYSICAL CHEMISTRY , cilt.280, 2022 (SCI-Expanded)

Monte Carlo and Molecular Dynamics Simulations suggest controlled release of corticosteroids from mesoporous host MIL-101 (Cr)

Koroglu M. A., Kurkcuoglu O., Sungur F. A.

MOLECULAR SIMULATION , cilt.47, sa.18, ss.1530-1539, 2021 (SCI-Expanded)

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Elucidating doxycycline loading and release performance of imprinted hydrogels with different cross-linker concentrations: a computational and experimental study

Inan T., Dalgakıran D., Kurkcuoglu O., Güner F. S.

JOURNAL OF POLYMER RESEARCH , cilt.28, sa.11, 2021 (SCI-Expanded)

Repurposing of FDA-approved drugs against active site and potential allosteric drug-binding sites of COVID-19 main protease

Yüce M., Çiçek E., Inan T., Dag A. B., Kurkcuoglu O., Sungur F. A.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.89, sa.11, ss.1425-1441, 2021 (SCI-Expanded) Sürdürülebilir Kalkınma

Sürdürülebilir Kalkınma

2-Thiobarbituric acid addition improves structural integrity and controlled drug delivery of biocompatible pectin hydrogels

Guner O. Z., Kocaaga B., Batirel S., Kurkcuoglu O., Guner F. S.

INTERNATIONAL JOURNAL OF POLYMERIC MATERIALS AND POLYMERIC BIOMATERIALS , cilt.70, sa.10, ss.703-711, 2021 (SCI-Expanded)

Fmoc-PEG Coated Single-Wall Carbon Nanotube Carriers by Non-covalent Functionalization: An Experimental and Molecular Dynamics Study

Yeniyurt Y., Kilic S., Guner-Yilmaz O. Z., Bozoglu S., Meran M., Baysak E., et al.

FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY , cilt.9, 2021 (SCI-Expanded)

Computational assessment of thermostability in miRNA:CNT system using molecular dynamics simulations

Güvensoy Morkoyun A., Kurkcuoglu O.

BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS , cilt.1865, sa.2, 2021 (SCI-Expanded)

Local and Global Motions Underlying Antibiotic Binding in Bacterial Ribosome

Kurkcuoglu O., Gunes M. U., Haliloğlu T.

JOURNAL OF CHEMICAL INFORMATION AND MODELING , cilt.60, sa.12, ss.6447-6461, 2020 (SCI-Expanded) Sürdürülebilir Kalkınma

Sürdürülebilir Kalkınma

Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model

Güzel P., Yildirim H. Z., Yüce M., Kurkcuoglu O.

FRONTIERS IN MOLECULAR BIOSCIENCES , cilt.7, 2020 (SCI-Expanded)

Low-methoxyl pectin-zeolite hydrogels controlling drug release promote in vitro wound healing

Kocaaga B., Kurkcuoglu O., Tatlıer M., BATIREL S., Güner F. S.

JOURNAL OF APPLIED POLYMER SCIENCE , cilt.136, sa.24, 2019 (SCI-Expanded)

Molecular dynamics simulations of adsorption of long pyrene-PEG chains on a thin carbon nanotube

Akkus P. D., Kürkçüoğlu Levitas A. Ö.

TURKISH JOURNAL OF CHEMISTRY , cilt.43, sa.4, ss.1159-1169, 2019 (SCI-Expanded)

A computational and experimental approach to develop minocycline-imprinted hydrogels and determination of their drug delivery performances

Eroglu B., Dalgakıran D., Inan T., Kurkcuoglu O., Güner F. S.

JOURNAL OF POLYMER RESEARCH , cilt.25, sa.12, 2018 (SCI-Expanded)

Exploring allosteric communication in multiple states of the bacterial ribosome using residue network analysis

TURKISH JOURNAL OF BIOLOGY , cilt.42, sa.5, ss.392-404, 2018 (SCI-Expanded)

Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models

Guzel P., Kürkçüoğlu Levitas A. Ö.

Biochimica Et Biophysica Acta-General Subjects , cilt.1861, ss.3131-3141, 2017 (SCI-Expanded)

A multiscale investigation on controlling bovine serum albumin adsorption onto polyurethane films

Kurkcuoglu S. S., Kürkçüoğlu Levitas A. Ö., Güner F. S.

JOURNAL OF APPLİED POLYMER SCİENCE , ss.1-14, 2017 (SCI-Expanded)

Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states

Can M. T., Kurkcuoglu Z., Ezeroglu G., Uyar A., Kurkcuoglu O., Doruker P.

PLOS ONE , cilt.12, sa.4, 2017 (SCI-Expanded)

The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases

Uyar A. Ö., Kurkcuoglu O., Nilsson L., Doruker P.

PHYSICAL BIOLOGY , cilt.8, sa.5, 2011 (SCI-Expanded)

Mechanism of Cohesin Loading onto Chromosomes: A Conformational Dynamics Study

Kurkcuoglu O., BATES P. A.

BIOPHYSICAL JOURNAL , cilt.99, sa.4, ss.1212-1220, 2010 (SCI-Expanded)

Focused Functional Dynamics of Supramolecules by Use of a Mixed-Resolution Elastic Network Model

Kurkcuoglu O., Turgut O. T., Cansu S., Jernigan R. L., Doruker P.

BIOPHYSICAL JOURNAL , cilt.97, sa.4, ss.1178-1187, 2009 (SCI-Expanded)

Collective dynamics of the ribosomal tunnel revealed by elastic network modeling

Kurkcuoglu O., Kurkcuoglu Z., Doruker P., Jernigan R. L.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS , cilt.75, sa.4, ss.837-845, 2009 (SCI-Expanded)

The ribosome structure controls and directs mRNA entry, translocation and exit dynamics

Kurkcuoglu O., Doruker P., SEN T. Z., Kloczkowski A., Jernigan R. L.

PHYSICAL BIOLOGY , cilt.5, sa.4, 2008 (SCI-Expanded)

Loop motions of triosephosphate isomerase observed with elastic networks

Kurkcuoglu O., JERNIGAN R., DORUKER P.

BIOCHEMISTRY , cilt.45, sa.4, ss.1173-1182, 2006 (SCI-Expanded)

Collective dynamics of large proteins from mixed coarse-grained elastic network model

Kurkcuoglu O., JERNIGAN R., DORUKER P.

QSAR & COMBINATORIAL SCIENCE , cilt.24, sa.4, ss.443-448, 2005 (SCI-Expanded)

Mixed levels of coarse-graining of large proteins using elastic network model succeeds in extracting the slowest motions

Kurkcuoglu O., JERNIGAN R., DORUKER P.

POLYMER , cilt.45, sa.2, ss.649-657, 2004 (SCI-Expanded)

Diğer Dergilerde Yayınlanan Makaleler

Preparation and Determination of In Vivo and In Vitro Performance of Doxycycline Imprinted Contact Lenses for Corneal Neovascularization Treatment.

ERKAL İLHAN S., KÜRKÇÜOĞLU LEVİTAS A. Ö., İNAN T., güner ö. z., DALGAKIRAN D., okutan b., et al.

Journal of the Turkish Chemical Society, Section A: Chemistry , cilt.5, sa.3, ss.1185-1192, 2018 (Scopus)

Kitap & Kitap Bölümleri

Kaba Ölçekli Elastik Ağyapı Modelleri ve Bakteriyel Ribozomun Yapı-İşlev İlişkisi

Güzel P., Kürkçüoğlu Levitas A. Ö.

Protein: Yapısı, Mühendisliği, Etkileşimleri, Dinamiği ve İlaç Tasarımındaki Yeri, Saliha Ece Acuner, Editör, Ankara Nobel Tıp Yayınevi, Ankara, ss.259-271, 2021

Polyurethanes: Surface Protein Adsorption

Kürkçüoğlu Levitas A. Ö., Güner F. S.

Encyclopedia of Biomedical Polymers and Polymeric Biomaterials, Munmaya Mishra, Editör, Taylor And Francis Group Publishing, Park Drive, ss.6724-6742, 2015

Coarse-graining the nano-machine ribosome to elucidate its functional dynamics

Kürkçüoğlu Levitas A. Ö., DORUKER P.

Ribosomes: Molecular Structure, Role in Biological Functions and Implications for Genetic Diseases, Zhou Lin, Wang Liu, Editör, Nova Science Specialty Technical Publishers, Inc. (Stp), Hauppauge, ss.119-132, 2013

Elastic network models of coarse-grained proteins are effective for studying the structural control exerted over their dynamics

Song G., DORUKER P., JERNIGAN R. L., Kürkçüoğlu Levitas A. Ö., Yang L.

Coarse-Graining of Condensed Phase and Biomolecular Systems, Voth G., Editör, Taylor & Francis Group, Llc, Boca Raton, ss.237-254, 2008

Metrikler

Yayın

106

Atıf (WoS)

280

H-İndeks (WoS)

8

Atıf (Scopus)

359

H-İndeks (Scopus)

10

Proje

16

Tez Danışmanlığı

4

Açık Erişim

1

BM Sürdürülebilir Kalkınma Amaçları